CSegSetWithImages Class Reference

A set of images and its segmentations, related to heart perfusion analysis. More...

#include <mia/2d/segsetwithimages.hh>

Inheritance diagram for CSegSetWithImages:

Collaboration diagram for CSegSetWithImages:

Public Types
typedef std::shared_ptr< CSegSetWithImages >	Pointer
typedef CSegSetWithImages	type
Public Types inherited from CSegSet
typedef std::vector< CSegFrame >	Frames
	convenience typedef for the frames comprising a segmentation set

Public Member Functions
void	add_frame (const CSegFrame &frame)
void	add_frame (const CSegFrame &frame, P2DImage image)
CSegSetWithImages *	clone () const
CSegSetWithImages	crop (const C2DIVector &start, const C2DIVector &end, const std::string &crop_filename_base)
	CSegSetWithImages ()
	CSegSetWithImages (const CXMLDocument &node, const std::string &fileroot)
	CSegSetWithImages (const std::string &filename, bool ignore_path)
	CSegSetWithImages (int version)
const C2DImageSeries &	get_images () const
void	save_images (const std::string &root) const
	save the images to their give file names with the given directory as root
void	set_images (const C2DImageSeries &series)
	sets the image series
Public Member Functions inherited from CSegSet
void	add_frame (const CSegFrame &frame)
	CSegSet ()
	Standard constructor.
	CSegSet (const CXMLDocument &node)
	CSegSet (const std::string &src_filename)
	CSegSet (int version)
const C2DBoundingBox	get_boundingbox () const
Frames &	get_frames ()
const Frames &	get_frames () const
int	get_LV_peak () const
int	get_preferred_reference () const
int	get_RV_peak () const
void	rename_base (const std::string &new_base)
void	set_LV_peak (int peak)
void	set_preferred_reference (int value)
void	set_RV_peak (int peak)
CSegSet	shift_and_rename (size_t skip, const C2DFVector &shift, const std::string &new_filename_base) const
void	transform (const C2DTransformation &t)
CXMLDocument	write () const
Public Member Functions inherited from CIOData
const std::string &	get_source_format () const
void	set_source_format (const std::string &format)

Static Public Attributes
static const char *	data_descr

Detailed Description

A set of images and its segmentations, related to heart perfusion analysis.

A set of slices containing segmentationinformation as well as the images.

Definition at line 40 of file segsetwithimages.hh.

Member Typedef Documentation

Pointer

typedef std::shared_ptr<CSegSetWithImages> CSegSetWithImages::Pointer

Definition at line 45 of file segsetwithimages.hh.

type

typedef CSegSetWithImages CSegSetWithImages::type

Definition at line 44 of file segsetwithimages.hh.

Constructor & Destructor Documentation

CSegSetWithImages() [1/4]

CSegSetWithImages::CSegSetWithImages

(

)

Referenced by clone(), and crop().

CSegSetWithImages() [2/4]

CSegSetWithImages::CSegSetWithImages

(

int

version

)

CSegSetWithImages() [3/4]

CSegSetWithImages::CSegSetWithImages	(	const CXMLDocument &	node,
		const std::string &	fileroot )

Read the segmentation set and load the images

Parameters

node	the root node of the XML segmentation set description
fileroot	is the root location of the set file and it is used as base path for the images.

CSegSetWithImages() [4/4]

CSegSetWithImages::CSegSetWithImages	(	const std::string &	filename,
		bool	ignore_path )

Read the segmentation set and load the images

Parameters

filename	segmentation set
ignore_path	if true the image reader will ignore the path assosiated with the images, and use the base directory of the segmentation set.

Member Function Documentation

add_frame() [1/2]

void CSegSet::add_frame

(

const CSegFrame &

frame

)

Append a segmentation frame

Parameters

frame

add_frame() [2/2]

void CSegSetWithImages::add_frame	(	const CSegFrame &	frame,
		P2DImage	image )

Add a frame ant its correcponding image

Parameters

frame	the new frame
image	the image

clone()

CSegSetWithImages * CSegSetWithImages::clone

(

)

const

References CSegSetWithImages().

crop()

CSegSetWithImages CSegSetWithImages::crop	(	const C2DIVector &	start,
		const C2DIVector &	end,
		const std::string &	crop_filename_base )

Run acropping on the inout images and correct the segmentation information accordingly

Parameters

start	upper left corner of the cropping reagion
end	lower right corner of the cropping reagion
crop_filename_base	new file name base for the cropped images

Returns

a new segmentation set with the cropped images and the corrected segmentation information

References CSegSetWithImages().

get_images()

const C2DImageSeries & CSegSetWithImages::get_images

(

)

const

Returns

a vector of the images

save_images()

void CSegSetWithImages::save_images

(

const std::string &

root

)

const

save the images to their give file names with the given directory as root

Parameters

root

References CSegSet::add_frame().

set_images()

void CSegSetWithImages::set_images

(

const C2DImageSeries &

series

)

sets the image series

Parameters

series

Field Documentation

data_descr

const char* CSegSetWithImages::data_descr

static

Definition at line 43 of file segsetwithimages.hh.

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The documentation for this class was generated from the following file:

• segsetwithimages.hh