Fisher vector feature encoding

A Fisher vector is an image feature encoding and quantization technique that can be seen as a soft or probabilistic version of the popular bag-of-visual-words or VLAD algorithms. Images are modelled using a visual vocabulary which is estimated using a K-mode Gaussian mixture model trained on low-level image features such as SIFT or ORB descriptors. The Fisher vector itself is a concatenation of the gradients of the Gaussian mixture model (GMM) with respect to its parameters - mixture weights, means, and covariance matrices.

In this example, we compute Fisher vectors for the digits dataset in scikit-learn, and train a classifier on these representations.

Please note that scikit-learn is required to run this example.

/usr/lib/python3/dist-packages/sklearn/mixture/_base.py:275: ConvergenceWarning:

Best performing initialization did not converge. Try different init parameters, or increase max_iter, tol, or check for degenerate data.

              precision    recall  f1-score   support

           0       0.67      0.89      0.76        36
           1       0.71      0.78      0.74        41
           2       0.67      0.77      0.72        44
           3       0.68      0.49      0.57        51
           4       0.67      0.60      0.63        52
           5       0.57      0.57      0.57        47
           6       0.55      0.60      0.58        43
           7       0.57      0.69      0.63        45
           8       0.62      0.57      0.60        40
           9       0.74      0.55      0.63        51

    accuracy                           0.64       450
   macro avg       0.65      0.65      0.64       450
weighted avg       0.65      0.64      0.64       450

from matplotlib import pyplot as plt
import numpy as np
from sklearn.datasets import load_digits
from sklearn.metrics import classification_report, ConfusionMatrixDisplay
from sklearn.model_selection import train_test_split
from sklearn.svm import LinearSVC

from skimage.transform import resize
from skimage.feature import fisher_vector, ORB, learn_gmm


data = load_digits()
images = data.images
targets = data.target

# Resize images so that ORB detects interest points for all images
images = np.array([resize(image, (80, 80)) for image in images])

# Compute ORB descriptors for each image
descriptors = []
for image in images:
    detector_extractor = ORB(n_keypoints=5, harris_k=0.01)
    detector_extractor.detect_and_extract(image)
    descriptors.append(detector_extractor.descriptors.astype('float32'))

# Split the data into training and testing subsets
train_descriptors, test_descriptors, train_targets, test_targets = train_test_split(
    descriptors, targets
)

# Train a K-mode GMM
k = 16
gmm = learn_gmm(train_descriptors, n_modes=k)

# Compute the Fisher vectors
training_fvs = np.array(
    [fisher_vector(descriptor_mat, gmm) for descriptor_mat in train_descriptors]
)

testing_fvs = np.array(
    [fisher_vector(descriptor_mat, gmm) for descriptor_mat in test_descriptors]
)

svm = LinearSVC().fit(training_fvs, train_targets)

predictions = svm.predict(testing_fvs)

print(classification_report(test_targets, predictions))

ConfusionMatrixDisplay.from_estimator(
    svm,
    testing_fvs,
    test_targets,
    cmap=plt.cm.Blues,
)

plt.show()